OBO Foundry dashboard analysis¶

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/tmp/ipykernel_26473/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    181
OWL/XML Syntax      2
RDF/XML             2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 185 152198.097297 808924.804198 52.0 1515.0 7116.0 33163.0 10002840.0
Declaration 185 28798.610811 188511.449350 5.0 475.0 1245.0 5333.0 2446701.0
SubClassOf 180 38793.410811 215094.907920 0.0 350.0 1370.0 6893.0 2446672.0
EquivalentClasses 129 2674.621622 13540.397818 0.0 0.0 25.0 222.0 126605.0
SubAnnotationPropertyOf 119 9.281081 20.325261 0.0 0.0 2.0 8.0 164.0
TransitiveObjectProperty 115 6.259459 11.176826 0.0 0.0 2.0 6.0 69.0
SubObjectPropertyOf 104 42.237838 97.948343 0.0 0.0 2.0 43.0 681.0
DisjointClasses 96 30.767568 101.186574 0.0 0.0 1.0 21.0 844.0
ObjectPropertyDomain 86 14.989189 27.699276 0.0 0.0 0.0 19.0 148.0
ObjectPropertyRange 86 14.789189 26.944466 0.0 0.0 0.0 20.0 142.0
InverseObjectProperties 82 9.291892 17.937427 0.0 0.0 0.0 13.0 113.0
SubPropertyChainOf 67 9.924324 26.852550 0.0 0.0 0.0 2.0 149.0
ClassAssertion 64 84.556757 493.688786 0.0 0.0 0.0 18.0 5528.0
FunctionalObjectProperty 51 0.837838 1.702197 0.0 0.0 0.0 1.0 9.0
SymmetricObjectProperty 49 1.664865 8.476060 0.0 0.0 0.0 1.0 81.0
DataPropertyRange 44 1.124324 3.139978 0.0 0.0 0.0 0.0 30.0
DataPropertyDomain 39 1.064865 3.168477 0.0 0.0 0.0 0.0 32.0
IrrefexiveObjectProperty 38 0.475676 1.351610 0.0 0.0 0.0 0.0 9.0
DifferentIndividuals 36 0.821622 6.052808 0.0 0.0 0.0 0.0 82.0
AnnotationPropertyRangeOf 36 1.427027 10.529272 0.0 0.0 0.0 0.0 139.0
EquivalentObjectProperties 31 1.454054 5.468218 0.0 0.0 0.0 0.0 36.0
SubDataPropertyOf 30 0.843243 3.574102 0.0 0.0 0.0 0.0 33.0
InverseFunctionalObjectProperty 27 0.189189 0.533540 0.0 0.0 0.0 0.0 4.0
Rule 26 1.983784 6.223619 0.0 0.0 0.0 0.0 31.0
FunctionalDataProperty 26 0.508108 1.543285 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 20 0.367568 1.646811 0.0 0.0 0.0 0.0 18.0
DisjointObjectProperties 15 0.232432 1.139712 0.0 0.0 0.0 0.0 10.0
ObjectPropertyAssertion 14 12.443243 101.414819 0.0 0.0 0.0 0.0 1024.0
ReflexiveObjectProperty 12 0.113514 0.503338 0.0 0.0 0.0 0.0 4.0
AnnotationPropertyDomain 10 0.264865 1.611814 0.0 0.0 0.0 0.0 17.0
DisjointUnion 7 0.086486 0.554704 0.0 0.0 0.0 0.0 5.0
DataPropertyAssertion 5 0.178378 1.596725 0.0 0.0 0.0 0.0 20.0
DatatypeDefinition 2 0.108108 1.398442 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 184 118463.654054 632820.693900 0.0 1510.0 5706.0 21949.0 7340018.0
ObjectSomeValuesFrom 163 17260.140541 87803.188775 0.0 32.0 445.0 2982.0 869538.0
ObjectIntersectionOf 123 4069.027027 20115.694585 0.0 0.0 32.0 477.0 202458.0
ObjectUnionOf 89 26.297297 82.528936 0.0 0.0 0.0 16.0 767.0
ObjectAllValuesFrom 74 31.783784 153.985377 0.0 0.0 0.0 9.0 1764.0
ObjectComplementOf 63 14.464865 88.621018 0.0 0.0 0.0 2.0 1122.0
ObjectMinCardinality 62 2.464865 8.186688 0.0 0.0 0.0 1.0 57.0
ObjectExactCardinality 48 9.783784 88.271055 0.0 0.0 0.0 1.0 1193.0
ObjectOneOf 46 3.718919 28.320505 0.0 0.0 0.0 0.0 275.0
DataMinCardinality 27 0.259459 0.720605 0.0 0.0 0.0 0.0 4.0
DataExactCardinality 24 0.578378 1.689342 0.0 0.0 0.0 0.0 7.0
DataSomeValuesFrom 23 6.891892 64.107579 0.0 0.0 0.0 0.0 859.0
ObjectHasValue 21 223.783784 1921.706778 0.0 0.0 0.0 0.0 21288.0
ObjectMaxCardinality 19 0.805405 4.475170 0.0 0.0 0.0 0.0 41.0
DataHasValue 17 118.913514 1564.984988 0.0 0.0 0.0 0.0 21288.0
ObjectHasSelf 17 0.232432 0.958388 0.0 0.0 0.0 0.0 6.0
DataAllValuesFrom 3 0.102703 1.024294 0.0 0.0 0.0 0.0 13.0
DataMaxCardinality 2 0.010811 0.103692 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.964 0.956 0.973
150 ro 0.800 0.844 0.757
8 bfo 0.786 0.778 0.795
132 pato 0.713 0.956 0.470
64 go 0.704 0.904 0.503
110 obi 0.697 0.971 0.422
20 cl 0.620 0.949 0.292
102 ncbitaxon 0.609 0.822 0.395
167 uberon 0.587 0.800 0.373
44 envo 0.566 0.942 0.189
144 pr 0.548 0.853 0.243
35 doid 0.539 0.949 0.130
14 chebi 0.509 0.587 0.432
175 wbls 0.502 0.993 0.011
176 wbphenotype 0.502 0.993 0.011
94 mondo 0.499 0.949 0.049
69 hp 0.498 0.867 0.130
139 plana 0.494 0.978 0.011
40 eco 0.488 0.971 0.005
113 ogms 0.485 0.727 0.243
164 trans 0.477 0.927 0.027
36 dpo 0.474 0.949 0.000
128 opl 0.472 0.927 0.016
96 mp 0.469 0.889 0.049
122 omrse 0.467 0.838 0.097
160 symp 0.466 0.882 0.049
63 gno 0.466 0.927 0.005
42 ecto 0.464 0.911 0.016
111 obib 0.463 0.898 0.027
108 oba 0.461 0.889 0.032
2 aism 0.460 0.904 0.016
46 eupath 0.453 0.889 0.016
134 pco 0.451 0.793 0.108
52 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
170 vbo 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
26 colao 0.445 0.889 0.000
11 caro 0.442 0.667 0.216
50 fbbt 0.442 0.867 0.016
51 fbcv 0.441 0.860 0.022
73 iao 0.441 0.882 0.000
99 mro 0.441 0.882 0.000
80 lepao 0.441 0.882 0.000
32 ddpheno 0.436 0.867 0.005
17 chmo 0.435 0.816 0.054
174 wbbt 0.435 0.860 0.011
53 fideo 0.433 0.867 0.000
173 vto 0.433 0.867 0.000
182 zfa 0.430 0.844 0.016
125 ontoavida 0.430 0.860 0.000
37 dron 0.428 0.771 0.086
41 ecocore 0.427 0.844 0.011
184 zp 0.424 0.838 0.011
25 cob 0.422 0.822 0.022
95 mop 0.421 0.816 0.027
152 rxno 0.421 0.838 0.005
66 hancestro 0.416 0.816 0.016
140 planp 0.413 0.822 0.005
1 agro 0.413 0.822 0.005
9 bspo 0.412 0.727 0.097
181 zeco 0.411 0.822 0.000
59 gecko 0.410 0.816 0.005
58 fypo 0.403 0.800 0.005
180 xpo 0.403 0.800 0.005
13 cdno 0.400 0.800 0.000
141 po 0.397 0.698 0.097
7 bco 0.396 0.787 0.005
75 ico 0.394 0.749 0.038
117 ohpi 0.394 0.787 0.000
38 duo 0.390 0.764 0.016
163 to 0.388 0.771 0.005
149 rbo 0.388 0.771 0.005
101 nbo 0.386 0.653 0.119
146 psdo 0.382 0.764 0.000
12 cdao 0.381 0.756 0.005
47 exo 0.380 0.733 0.027
56 foodon 0.373 0.660 0.086
61 geno 0.371 0.727 0.016
70 hsapdv 0.369 0.711 0.027
76 ido 0.367 0.616 0.119
159 swo 0.366 0.727 0.005
177 xao 0.363 0.711 0.016
45 epio 0.363 0.727 0.000
145 proco 0.363 0.727 0.000
0 ado 0.363 0.727 0.000
161 t4fs 0.363 0.727 0.000
57 fovt 0.363 0.727 0.000
79 labo 0.360 0.720 0.000
21 clao 0.360 0.720 0.000
103 ncit 0.358 0.593 0.124
127 oostt 0.357 0.704 0.011
136 pdumdv 0.355 0.711 0.000
39 ecao 0.355 0.711 0.000
43 emapa 0.354 0.704 0.005
158 stato 0.354 0.622 0.086
178 xco 0.349 0.682 0.016
5 apollo_sv 0.348 0.593 0.103
116 ohmi 0.347 0.689 0.005
34 disdriv 0.344 0.689 0.000
118 olatdv 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
130 ornaseq 0.344 0.689 0.000
10 bto 0.343 0.653 0.032
82 maxo 0.341 0.660 0.022
168 uo 0.340 0.511 0.168
135 pdro 0.338 0.653 0.022
169 upheno 0.335 0.638 0.032
60 genepio 0.335 0.638 0.032
19 cio 0.334 0.667 0.000
15 cheminf 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
78 kisao 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
16 chiro 0.334 0.667 0.000
3 amphx 0.330 0.660 0.000
48 fao 0.330 0.644 0.016
154 scdo 0.329 0.653 0.005
162 taxrank 0.328 0.644 0.011
143 ppo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
27 cro 0.322 0.644 0.000
81 ma 0.322 0.644 0.000
28 cteno 0.322 0.644 0.000
156 so 0.319 0.460 0.178
31 ddanat 0.317 0.622 0.011
71 hso 0.316 0.631 0.000
91 mmo 0.316 0.616 0.016
129 opmi 0.316 0.593 0.038
30 cvdo 0.314 0.616 0.011
183 zfs 0.314 0.622 0.005
109 obcs 0.310 0.593 0.027
55 fobi 0.308 0.616 0.000
84 mf 0.308 0.578 0.038
49 fbbi 0.308 0.616 0.000
89 miapa 0.308 0.616 0.000
62 geo 0.307 0.571 0.043
112 ogg 0.302 0.549 0.054
153 sbo 0.302 0.600 0.005
97 mpath 0.300 0.556 0.043
107 oarcs 0.300 0.600 0.000
166 txpo 0.299 0.593 0.005
106 oae 0.298 0.504 0.092
179 xlmod 0.296 0.593 0.000
115 ohd 0.296 0.593 0.000
67 hao 0.296 0.593 0.000
142 poro 0.296 0.593 0.000
148 pw 0.290 0.564 0.016
23 clyh 0.289 0.578 0.000
83 mco 0.289 0.578 0.000
29 cto 0.288 0.571 0.005
54 flopo 0.288 0.571 0.005
119 omit 0.285 0.542 0.027
151 rs 0.284 0.564 0.005
147 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
65 gsso 0.275 0.527 0.022
24 cmo 0.272 0.489 0.054
137 peco 0.272 0.511 0.032
87 mfomd 0.267 0.511 0.022
100 ms 0.266 0.520 0.011
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
124 ons 0.256 0.489 0.022
165 tto 0.256 0.511 0.000
105 nomen 0.252 0.504 0.000
88 mi 0.245 0.467 0.022
6 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
172 vt 0.242 0.467 0.016
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
171 vo 0.239 0.393 0.086
155 sepio 0.236 0.467 0.005
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
93 mod 0.227 0.438 0.016
33 dideo 0.222 0.438 0.005
157 spd 0.219 0.438 0.000
22 clo 0.202 0.333 0.070
131 ovae 0.197 0.393 0.000
114 ogsf 0.197 0.393 0.000
90 micro 0.192 0.378 0.005

OBO Score Summary

count mean std min 25% 50% 75% max
score 185.0 0.375092 0.113802 0.192 0.302 0.355 0.435 0.964
score_dash 185.0 0.696346 0.156268 0.333 0.593 0.689 0.822 0.993
score_impact 185.0 0.053757 0.134201 0.000 0.000 0.011 0.032 0.973

OBO dependency graph